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I'm not a doctor, and the only one who can really answer that question is an Aviation Medical Examiner. There's nothing wrong with calling and asking one prior to your exam. if you go to faa.gov, there is a web site with a FAQ page. They also have a telephone number for the office in oaklahoma. In my expereince, though sometimes slow in getting back to you, they have been happy to answer questions for pilots.
If the only problem you have is with night vision, you probably won't be "rejected" but will have a night restriction, which can later be removed or waivered.
The procedure is not uncommon, I wouldn't worry about it too much, the condition is temporary, right?
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